PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104669.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 380aa    MW: 41827.6 Da    PI: 8.0029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104669.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022143166123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F  + +L++H+ + H
  XP_010104669.1 143 FPCTACGEIFQKPQTLEQHQAVkH 166
                     89******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034143171IPR007087Zinc finger, C2H2
PROSITE patternPS000280145166IPR007087Zinc finger, C2H2
SuperFamilySSF563993.84E-14168379No hitNo description
Gene3DG3DSA:3.90.228.101.5E-5179285IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.105.1E-4315379IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAPSEASSLF NKVISFFLIL LLHFGCFAFT STDAAEDGGG REGHGNNNRS SKKRKLSPVI  60
SSSWSFLKGI FASKSCKTSI QTHPSTPPRS SQLSIASLVI LPENTADQHL SDVVPRKTSR  120
PESDISSSAE KESLFFPLRN DIFPCTACGE IFQKPQTLEQ HQAVKHAVSE LIDGDSGKNI  180
VRIIFKTGWT DTHKSPIIHR ILKIHNSSKI LSRFEEYRET VKAKAARNGA VRRRDERCIA  240
DGNELLRFHC CTFLCDLGLN GNSAICNHQY CSVCGIIKSG FSPKLDGIST LSSSWRAHVA  300
IPEEIEEEFG FMNVKRAMLV CRVVAGRVGS EAFEADKEDG GFDSVLGRGG SGVHTRMDEE  360
ELLAFNPRAV LPCFVIVYTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104669.10.0hypothetical protein L484_022047
TrEMBLW9RPJ20.0W9RPJ2_9R
STRINGPOPTR_0001s25700.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-118C2H2 family protein